plot.cross {qtl} | R Documentation |
Plots grid of the missing genotypes, genetic map, and histograms or barplots of phenotypes for the data from an experimental cross.
plot.cross(x, auto.layout=TRUE, ...)
x |
An object of class cross . See
read.cross for details. |
auto.layout |
If TRUE, par(mfrow) is set so that all plots
fit within one figure. |
... |
Ignored at this point. |
Calls plot.missing
, plot.map
and
hist
or barplot
to plot the
missing genotypes, genetic map, and histograms or barplots of all
phenotypes.
If auto.format=TRUE
, par(mfrow)
is used with
ceiling(sqrt(n.phe+2))
rows and the minimum number of columns
so that all plots fit on the plotting device.
Numeric phenotypes are displayed as histograms with approximately
sqrt(n)+5 bins. Phenotypes that are factors are
displayed as barplots by calling barplot(table(phe))
.
None.
Karl W Broman, kbroman@jhsph.edu
plot.missing
, plot.map
,
hist
, barplot
,
table
data(fake.bc) plot(fake.bc)